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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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117 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATG2B
ENSSSCG00000002502
ENSG00000066739
Autophagy-related protein 2 homolog B
Tissue enhanced
Detected in all
choroid plexus:
73.8
C3orf49
ENSSSCG00000011490
ENSG00000163632
Chromosome 3 open reading frame 49
Tissue enriched
Detected in some
choroid plexus:
15.4
CAB39L
ENSSSCG00000009397
ENSG00000102547
Calcium binding protein 39 like
Tissue enriched
Detected in all
choroid plexus:
113.8
COL4A4
ENSSSCG00000016244
ENSG00000081052
Collagen type IV alpha 4 chain
Group enriched
Detected in some
cornea:
48.5
lens:
82.9
DEFB124
ENSSSCG00000030733
ENSG00000180383
Defensin beta 124
Group enriched
Detected in some
choroid plexus:
21.2
epididymis:
29.7
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FREM2
ENSSSCG00000009364
ENSG00000150893
FRAS1 related extracellular matrix protein 2
Tissue enhanced
Detected in many
choroid plexus:
53.6
kidney:
23.0
thyroid gland:
23.4
GDPD2
ENSSSCG00000012376
ENSG00000130055
Glycerophosphodiester phosphodiesterase domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
25.2
skin:
29.3
GP5
ENSSSCG00000031035
ENSG00000178732
Glycoprotein V platelet
Group enriched
Detected in some
choroid plexus:
7.3
dura mater:
2.7
fallopian tube:
6.5
pineal gland:
10.3
thyroid gland:
4.8
GUCY2F
ENSSSCG00000012580
ENSG00000101890
Guanylate cyclase 2F, retinal
Group enriched
Detected in some
choroid plexus:
7.2
pituitary gland:
5.9
ISYNA1
ENSSSCG00000040524
ENSG00000105655
Inositol-3-phosphate synthase 1
Tissue enhanced
Detected in many
choroid plexus:
135.7
testis:
64.6
KCNE2
ENSSSCG00000012045
ENSG00000159197
Potassium voltage-gated channel subfamily E regulatory subunit 2
Tissue enhanced
Detected in many
choroid plexus:
9.4
ductus deferens:
12.5
endometrium:
10.8
stomach:
7.0
KCNJ13
ENSSSCG00000025038
ENSG00000115474
Potassium voltage-gated channel subfamily J member 13
Tissue enriched
Detected in many
choroid plexus:
250.6
LCN15
ENSSSCG00000038233
ENSG00000177984
Lipocalin 15
Tissue enhanced
Detected in many
choroid plexus:
30.3
MAP3K15
ENSSSCG00000020735
ENSG00000180815
Mitogen-activated protein kinase kinase kinase 15
Tissue enriched
Detected in some
choroid plexus:
38.1
MEPE
ENSSSCG00000028730
ENSG00000152595
Matrix extracellular phosphoglycoprotein
Tissue enhanced
Detected in some
bone marrow:
8.1
choroid plexus:
19.0
MFRP
ENSSSCG00000015119
ENSG00000235718
Membrane frizzled-related protein
Tissue enriched
Detected in some
choroid plexus:
190.0
MIOS
ENSSSCG00000015343
ENSG00000164654
WD repeat-containing protein mio
Tissue enhanced
Detected in all
choroid plexus:
45.3
MLANA
ENSSSCG00000005206
ENSG00000120215
Melan-A
Tissue enhanced
Detected in many
choroid plexus:
11.0
na
ENSSSCG00000005534
Tissue enhanced
Detected in some
cornea:
6.8
gallbladder:
6.4
kidney:
5.5
lens:
6.8
vagus nerve:
3.6
na
ENSSSCG00000005555
Tissue enhanced
Detected in some
brain:
2.2
choroid plexus:
1.0
testis:
2.4
na
ENSSSCG00000005558
Tissue enhanced
Detected in some
cornea:
7.4
kidney:
5.3
lens:
8.1
na
ENSSSCG00000005568
Tissue enhanced
Detected in some
cornea:
4.9
kidney:
2.6
lens:
5.0
vagus nerve:
3.2
na
ENSSSCG00000005578
Low tissue specificity
Detected in many
na
ENSSSCG00000005868
Tissue enhanced
Detected in some
cartilage:
2.5
cornea:
4.9
gallbladder:
3.5
kidney:
3.4
na
ENSSSCG00000005869
Tissue enriched
Detected in some
choroid plexus:
18.8
na
ENSSSCG00000005872
Group enriched
Detected in some
choroid plexus:
11.3
kidney:
3.2
na
ENSSSCG00000005873
Tissue enhanced
Detected in some
brain:
3.0
choroid plexus:
1.5
kidney:
1.4
na
ENSSSCG00000007645
Tissue enhanced
Detected in some
choroid plexus:
11.6
na
ENSSSCG00000009347
ENSG00000133116
Group enriched
Detected in some
choroid plexus:
76.4
kidney:
36.2
na
ENSSSCG00000013696
Tissue enhanced
Detected in some
lens:
1.5
testis:
1.3
na
ENSSSCG00000016245
ENSG00000169031
Group enriched
Detected in some
cornea:
40.8
lens:
74.9
na
ENSSSCG00000027490
Tissue enhanced
Detected in single
choroid plexus:
1.9
na
ENSSSCG00000027732
Tissue enhanced
Detected in some
brain:
2.1
kidney:
2.1
lens:
2.4
testis:
4.1
na
ENSSSCG00000030771
Tissue enhanced
Detected in some
choroid plexus:
2.2
esophagus:
2.6
lung:
1.5
male glands:
2.4
upper respiratory system:
1.7
na
ENSSSCG00000031181
Group enriched
Detected in some
cornea:
20.5
kidney:
7.0
lens:
25.1
na
ENSSSCG00000031286
Tissue enhanced
Detected in some
choroid plexus:
6.2
cornea:
5.3
lens:
4.8
na
ENSSSCG00000031341
Tissue enriched
Detected in some
choroid plexus:
17.9
na
ENSSSCG00000031343
Tissue enhanced
Detected in some
choroid plexus:
7.9
cornea:
10.9
gallbladder:
7.3
kidney:
8.2
lens:
8.9
na
ENSSSCG00000031416
Group enriched
Detected in some
choroid plexus:
22.2
kidney:
5.5
na
ENSSSCG00000031516
Tissue enhanced
Detected in some
choroid plexus:
5.8
kidney:
4.0
testis:
2.1
na
ENSSSCG00000031697
Tissue enhanced
Detected in some
brain:
3.1
choroid plexus:
1.1
pineal gland:
1.2
testis:
2.9
na
ENSSSCG00000032009
Tissue enhanced
Detected in many
retina:
54.7
na
ENSSSCG00000032212
Tissue enriched
Detected in some
choroid plexus:
10.6
na
ENSSSCG00000032491
Tissue enhanced
Detected in some
choroid plexus:
8.7
kidney:
10.1
na
ENSSSCG00000032537
Tissue enhanced
Detected in some
choroid plexus:
10.9
kidney:
18.8
testis:
6.0
na
ENSSSCG00000032733
Tissue enhanced
Detected in some
brain:
4.9
choroid plexus:
10.1
testis:
3.8
na
ENSSSCG00000032825
Group enriched
Detected in some
choroid plexus:
10.4
kidney:
3.2
na
ENSSSCG00000033158
Tissue enhanced
Detected in some
cornea:
6.5
kidney:
4.1
lens:
4.7
vagus nerve:
2.6
na
ENSSSCG00000033571
Group enriched
Detected in some
choroid plexus:
5.5
kidney:
17.4
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